生物系统

1） .bashrc中
export JAVALIB=/home/binf027/lib/java
export CLASSPATH=$JAVALIB/jfreechart.jar:$JAVALIB/jcommon.jar:$JAVALIB/prefuse.jar:$JAVALIB/noia_icons.jar:$JAVALIB/biojava.jar:$JAVALIB/bytecode.jar:$JAVALIB/commons-cli.jar:$JAVALIB/commons-collections-3.1.jar:$JAVALIB/commons-dbcp-1.1.jar:$JAVALIB/commons-pool-1.1.jar:$JAVALIB/axis.jar:$JAVALIB/jaxrpc.jar:$JAVALIB/saaj.jar:$JAVALIB/commons-logging-1.1.1.jar:$JAVALIB/commons-discovery-0.2.jar:$JAVALIB/wsdl4j-1.5.1.jar:$JAVALIB/sbml2.jar:$JAVALIB/keggapi.jar:$JAVALIB/AppFramework.jar:$JAVALIB/swing-worker.jar:$JAVALIB/hsqldb.jar:$JAVALIB/ext/j3dcore.jar:$JAVALIB/ext/j3dutils.jar:$JAVALIB/ext/vecmath.jar:.

commons-collections-3.1.jar
commons-logging-1.1.1.jar

2）apache-tomcat-6.0.16/lib (一定要jsf 1.1， tomahawk-1.1.7-SNAPSHOT.jar，tomahawk-sandbox-1.1.7-SNAPSHOT.jar)
下载: http://liangcg.googlepages.com/apache-tomcat-lib.rar
列表
annotations-api.jar jasper.jar
catalina-ant.jar jasper-jdt.jar
catalina-ha.jar jsp-api.jar
catalina.jar jstl-1.1.0.jar
catalina-tribes.jar myfaces-api-1.1.6-SNAPSHOT.jar
commons-beanutils-1.7.0.jar myfaces-impl-1.1.6-SNAPSHOT.jar
commons-codec-1.3.jar oro-2.0.8.jar
commons-collections-3.1.jar servlet-api.jar
commons-digester-1.8.jar standard.jar
commons-el-1.0.jar tomahawk-1.1.7-SNAPSHOT.jar
commons-fileupload-1.0.jar tomahawk-sandbox-1.1.7-SNAPSHOT.jar
commons-lang-2.1.jar tomcat-coyote.jar
commons-logging-1.1.1.jar tomcat-dbcp.jar
commons-validator-1.3.1.jar tomcat-i18n-es.jar
el-api.jar tomcat-i18n-fr.jar
jasper-el.jar tomcat-i18n-ja.jar

3) JDK: java -version
java version "1.6.0"
OpenJDK Runtime Environment (build 1.6.0-b10)
OpenJDK Server VM (build 1.6.0-b10, mixed mode)

4)tomahawkdemo(eclipse) 要求 web.xml 中使用 .jsf
下载: http://liangcg.googlepages.com/tomahawkdemo.rar